../../tmp/servers/virsirnadb/1233527755
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi30021gtgcgatccagatttgttttg21
V01148.1 Genome of human poliovirus type 1 (Mahoney strain). (One of two versi6611.....................6631100
V01150.1 Human poliovirus strain Sabin 1 complete genome, strain Sabin 1 6619.....................6639100
AJ416942.1 Human poliovirus 1 genomic RNA for polyprotein, strain CHAT 10A-11 6619.....................6639100
AJ430385.1 Human poliovirus 1 genomic RNA for polyprotein gene, strain Cox 6619.....................6639100
AY184219.1 Human poliovirus 1 strain Sabin 1, complete genome 6619.....................6639100
AF538840.1 Human poliovirus 1 isolate TCDCE01-135, complete genome 6589.....................6609100
AF538841.1 Human poliovirus 1 isolate TCDC01-113, complete genome 6619.....................6639100
EF682343.1 Human poliovirus 1 strain USA10774 polyprotein gene, complete cds 6593.....................6613100
EF682344.1 Human poliovirus 1 strain USA10775 polyprotein gene, complete cds 6593.....................6613100
EF682346.1 Human poliovirus 1 strain USA10780 polyprotein gene, complete cds 6593.....................6613100
EF682347.1 Human poliovirus 1 strain USA10781 polyprotein gene, complete cds 6593.....................6613100
EF682348.1 Human poliovirus 1 strain USA10782 polyprotein gene, complete cds 6593.....................6613100
EF682349.1 Human poliovirus 1 strain USA10771 polyprotein gene, complete cds 6593.....................6613100
EF682350.1 Human poliovirus 1 strain USA10772 polyprotein gene, complete cds 6593.....................6613100
EF682351.1 Human poliovirus 1 strain USA10778 polyprotein gene, complete cds 6593.....................6613100
EF682352.1 Human poliovirus 1 strain USA10770 polyprotein gene, complete cds 6593.....................6613100
EF682353.1 Human poliovirus 1 strain USA10777 polyprotein gene, complete cds 6593.....................6613100
EF682354.1 Human poliovirus 1 strain USA10779 polyprotein gene, complete cds 6593.....................6613100
EF682355.1 Human poliovirus 1 strain USA10776 polyprotein gene, complete cds 6593.....................6613100
EF682356.1 Human poliovirus 1 strain USA10784, complete genome 6619.....................6639100
EF682357.1 Human poliovirus 1 strain USA10785, complete genome 6619.....................6639100
EF682358.1 Human poliovirus 1 strain USA10783, complete genome 6619.....................6639100
EF682359.1 Human poliovirus 1 strain USA10786, complete genome 6619.....................6639100
EU794953.1 Human poliovirus 1 isolate A21 polyprotein gene, complete cds 6571.....................6591100
EU794954.1 Human poliovirus 1 isolate A49 polyprotein gene, complete cds 6571.....................6591100
EU794955.1 Human poliovirus 1 isolate A63 polyprotein gene, complete cds 6571.....................6591100
EU794956.1 Human poliovirus 1 isolate A84 polyprotein gene, complete cds 6571.....................6591100
EU794957.1 Human poliovirus 1 isolate A88 polyprotein gene, complete cds 6571.....................6591100
EU794958.1 Human poliovirus 1 isolate A91 polyprotein gene, complete cds 6571.....................6591100
EU794959.1 Human poliovirus 1 isolate A102 polyprotein gene, complete cds 6571.....................6591100
EU794960.1 Human poliovirus 1 isolate A105 polyprotein gene, complete cds 6571.....................6591100
EU794961.1 Human poliovirus 1 isolate A118 polyprotein gene, complete cds 6571.....................6591100
EU794962.1 Human poliovirus 1 isolate A199 polyprotein gene, complete cds 6571.....................6591100
FJ769378.1 Human poliovirus 1 strain CHN8184/GZ/CHN/2004, complete genome 6619.....................6639100
FJ769379.1 Human poliovirus 1 strain CHN8229-1/GZ/CHN/2004, complete genome 6619.....................6639100
FJ769380.1 Human poliovirus 1 strain CHN8229-2/GZ/CHN/2004, complete genome 6619.....................6639100
FJ769381.1 Human poliovirus 1 strain CHN8229-3/GZ/CHN/2004, complete genome 6619.....................6639100
FJ769382.1 Human poliovirus 1 strain CHN8233c/GZ/CHN/2004, complete genome 6619.....................6639100
FJ769383.1 Human poliovirus 1 strain CHN8225c/GZ/CHN/2004, complete genome 6619.....................6639100
FJ769384.1 Human poliovirus 1 strain CHN8248c/GZ/CHN/2004, complete genome 6619.....................6639100
FJ769385.1 Human poliovirus 1 strain CHN8264c/GZ/CHN/2004, complete genome 6619.....................6639100
AF538842.1 Human poliovirus 1 isolate TCDC01-330, complete genome 6611...t.................663195
AF538843.1 Human poliovirus 1 isolate TCDC01-861, complete genome 6611...t.................663195
AY928383.1 Human poliovirus 1 isolate d261-2002037607 polyprotein gene, complete6611...t.................663195
AY928384.1 Human poliovirus 1 isolate d224-2002037606 polyprotein gene, complete6611...t.................663195
AY928385.1 Human poliovirus 1 isolate d054-2002037604 polyprotein gene, complete6611...t.................663195
AY928386.1 Human poliovirus 1 isolate d179-2002037605 polyprotein gene, complete6611...t.................663195
AY928387.1 Human poliovirus 1 isolate d018-2002037602 polyprotein gene, complete6611...t.................663195
EF682345.1 Human poliovirus 1 strain USA10773 polyprotein gene, complete cds 6593...t.................661395
EU794963.1 Human poliovirus 1 isolate A449 polyprotein gene, complete cds 6571...t.................659195
X04468.1 Poliovirus type 3 strain 23127 complete genome 6615_..t.................663490
AY278553.1 Human poliovirus 1 isolate P1W/Bar65 (19276), complete genome 6616_..t.................663590
AY278553.1 Human poliovirus 1 isolate P1W/Bar65 (19276), complete genome 2857______.........._____286647
AF416342.1 Human poliovirus 1 isolate HAI01-013, complete genome 6620_..t.................663990
AF416342.1 Human poliovirus 1 isolate HAI01-013, complete genome 2861______..........a.a..287561
AF111953.2 Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome 6624_..t.................664390
EF555644.1 Human enterovirus 99, complete genome 6626_.....c..............664590
AB180070.1 Human poliovirus 1 gene for polyprotein, complete cds, isolate:Mindan6619...t..c..............663990
AB180071.1 Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon-6619...t..c..............663990
AB180072.1 Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon-6619...t..c..............663990
AB180073.1 Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon-6619...t..c..............663990
D00625.1POL2CG1 Human poliovirus 2 genomic RNA, complete genome 6619_..t..c..............663885
M12197.1POL2LAN Poliovirus type 2 (Lansing strain), complete genome 6619_..t..c..............663885
AF405666.1 Human poliovirus 1 isolate HAI01007, complete genome 6620_..t...........a.....663985
AF405666.1 Human poliovirus 1 isolate HAI01007, complete genome 2861______..........a.a..287561
AY238473.1 Human poliovirus 2 strain MEF-1 polyprotein gene, complete cds 6619_..t..c..............663885
AF499640.1 Human coxsackievirus A18 strain G13, complete genome 6637_..t..c..............665685
AF499640.1 Human coxsackievirus A18 strain G13, complete genome 2881______.........._____289047
AF546702.1 Human coxsackievirus A21 strain Kuykendall, complete genome 6585_..t..c..............660485
AF465513.1 Human coxsackievirus A18 strain G-13, complete genome 6637_..t..c..............665685
AF465513.1 Human coxsackievirus A18 strain G-13, complete genome 2881______.........._____289047
AF465515.1 Human coxsackievirus A21 strain Kuykendall, complete genome 6585_..t..c..............660485
AF111961.2 Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome 6624_..t..c..............664385
DQ890388.1 Human poliovirus 2 strain PER8310769, complete genome 6619_..t...........a.....663885
DQ890388.1 Human poliovirus 2 strain PER8310769, complete genome 3409________...c.........339757
EF555645.1 Human enterovirus 102, complete genome 6617_..t...........a.....663685
FJ914252.2 Human poliovirus 3 strain SWI10947, complete genome 6615_..t..c..............663485
AJ293918.1 Human poliovirus type 3 complete genome, live-attenuated strain USOL-6615.........t..cc.......663585
AJ293918.1 Human poliovirus type 3 complete genome, live-attenuated strain USOL-5645______..g.........___563452
AF499635.1 Human coxsackievirus A1 strain Tompkins, complete genome 6573...t.........g.c.....659385
X00595.1 Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab)) 6619_..t.........c.a.....663880
X00595.1 Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab)) 3409________...c.........339757
AF462418.1 Human poliovirus 1 99/056-252-14, complete genome 6620_..t.........c.a.....663980
AF462418.1 Human poliovirus 1 99/056-252-14, complete genome 3410________...c.........339857
AF462419.1 Human poliovirus 1 RUS-1161-96-001, complete genome 6620_..t.........c.a.....663980
AF462419.1 Human poliovirus 1 RUS-1161-96-001, complete genome 3410________...c.........339857
AY184220.1 Human poliovirus 2 strain Sabin 2, complete genome 6619_..t.........c.a.....663880
AY184220.1 Human poliovirus 2 strain Sabin 2, complete genome 3409________...c.........339757
AF541919.1 Human poliovirus 3 isolate PV3/NOR/01/8 polyprotein mRNA, complete cd6601_..t.........c.a.....662080
AF541919.1 Human poliovirus 3 isolate PV3/NOR/01/8 polyprotein mRNA, complete cd3391________...c.........337957
AY177685.1 Human poliovirus 2, complete genome 6619_..t.........c.a.....663880
AY177685.1 Human poliovirus 2, complete genome 3409________...c.........339757
AY278549.1 Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome 6619_..t.........c.a.....663880
AY278550.1 Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome 6619_..t.........c.a.....663880
AY278550.1 Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome 3409________...c.........339757
AY278552.1 Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome 6619_..t.........c.a.....663880
AY278552.1 Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome 3409________...c.........339757
AF499642.1 Human coxsackievirus A20 strain IH35, complete genome 6616_..t.........c.a.....663580
AF499642.1 Human coxsackievirus A20 strain IH35, complete genome 5651...att............___563471
AF499642.1 Human coxsackievirus A20 strain IH35, complete genome 2857______..........a.a._287057
AF465514.1 Human coxsackievirus A20 strain IH Pool 35, complete genome 6616_..t.........c.a.....663580
AF465514.1 Human coxsackievirus A20 strain IH Pool 35, complete genome 5651...att............___563471
AF465514.1 Human coxsackievirus A20 strain IH Pool 35, complete genome 2857______..........a.a._287057
AF111984.2 Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome 6623_..t..c..g...........664280
AF111984.2 Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome 2864______.........._____287347
DQ205099.1 Human poliovirus 2 clone S2R9, complete genome 6619_..t.........c.a.....663880
DQ205099.1 Human poliovirus 2 clone S2R9, complete genome 3409________...c.........339757
DQ205099.1 Human poliovirus 2 clone S2R9, complete genome 5648______..a.........___563752
DQ890387.1 Human poliovirus 2 strain USA9810768, complete genome 6619_..t.........c.a.....663880
DQ890387.1 Human poliovirus 2 strain USA9810768, complete genome 3409________...c.........339757
EF026081.1 Human coxsackievirus A24 strain Joseph, complete genome 6638_..t..c...........c..665780
EF456707.1 Human poliovirus 3 isolate K/2002 polyprotein gene, complete cds 6571_..t.........c.a.....659080
EF456707.1 Human poliovirus 3 isolate K/2002 polyprotein gene, complete cds 3361________...c.........334957
FM955278.1 Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA176637_..t.........c....c..665680
FM955278.1 Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA176085_..g.t..t.at.........606671
FJ898290.1 Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl6619_..t.........c.a.....663880
FJ898290.1 Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl3409________...c.........339757
HM107835.1 Human poliovirus 2 isolate CHN8316, complete genome 6619_..t.........c.a.....663880
HM107835.1 Human poliovirus 2 isolate CHN8316, complete genome 3409________...c.........339757
X00596.1 Poliovirus type 3 mRNA (vaccine strain Sabin 3 (Leon 12a1b)) 6613_...........cc.a..c..663276
X00596.1 Poliovirus type 3 mRNA (vaccine strain Sabin 3 (Leon 12a1b)) 6487____.t....ct.........647166
X00925.1 Poliovirus type 3 leon 12 a1b sequence (P3/Leon 12 a1b) 6611_...........cc.a..c..663076
X00925.1 Poliovirus type 3 leon 12 a1b sequence (P3/Leon 12 a1b) 6485____.t....ct.........646966
K01392.1POL3L37 Poliovirus P3/Leon/37 (type 3), complete genome 6611_...........cc.a..c..663076
K01392.1POL3L37 Poliovirus P3/Leon/37 (type 3), complete genome 6485____.t....ct.........646966
AY184221.1 Human poliovirus 3 strain Sabin 3, complete genome 6611_...........cc.a..c..663076
AY184221.1 Human poliovirus 3 strain Sabin 3, complete genome 6485____.t....ct.........646966
AY948201.1 Human poliovirus 2 isolate CHN1025 polyprotein gene, complete cds 6620_...........cc.a..c..663976
AY948201.1 Human poliovirus 2 isolate CHN1025 polyprotein gene, complete cds 6494____.t....ct.........647866
FJ859058.1 Human poliovirus 1 isolate 10050, complete genome 6620_...........cc.a..c..663976
FJ859058.1 Human poliovirus 1 isolate 10050, complete genome 6494____.t....ct.........647866
FJ859058.1 Human poliovirus 1 isolate 10050, complete genome 3410________...c.........339857
FJ859059.1 Human poliovirus 1 isolate 10086c, complete genome 6620_...........cc.a..c..663976
FJ859059.1 Human poliovirus 1 isolate 10086c, complete genome 6494____.t....ct.........647866
FJ859059.1 Human poliovirus 1 isolate 10086c, complete genome 3410________...c.........339857
FJ859060.1 Human poliovirus 1 isolate 10091c, complete genome 6620_...........cc.a..c..663976
FJ859060.1 Human poliovirus 1 isolate 10091c, complete genome 6494____.t....ct.........647866
FJ859060.1 Human poliovirus 1 isolate 10091c, complete genome 3410________...c.........339857
FJ859061.1 Human poliovirus 1 isolate 10092c, complete genome 6620_...........cc.a..c..663976
FJ859061.1 Human poliovirus 1 isolate 10092c, complete genome 3410________...c.........339857
FJ859062.1 Human poliovirus 1 isolate 10094c, complete genome 6620_...........cc.a..c..663976
FJ859062.1 Human poliovirus 1 isolate 10094c, complete genome 6494____.t....ct.........647866
FJ859062.1 Human poliovirus 1 isolate 10094c, complete genome 3410________...c.........339857
FJ859063.1 Human poliovirus 1 isolate 10095c, complete genome 6620_...........cc.a..c..663976
FJ859063.1 Human poliovirus 1 isolate 10095c, complete genome 6494____.t....ct.........647866
FJ859063.1 Human poliovirus 1 isolate 10095c, complete genome 3410________...c.........339857
FJ859064.1 Human poliovirus 1 isolate 10097c, complete genome 6620_...........cc.a..c..663976
FJ859064.1 Human poliovirus 1 isolate 10097c, complete genome 6494____.t....ct.........647866
HM107832.1 Human poliovirus 2 isolate CHN1054, complete genome 6619_...........cc.a..c..663876
HM107832.1 Human poliovirus 2 isolate CHN1054, complete genome 6493____.t....ct.........647766
HM107832.1 Human poliovirus 2 isolate CHN1054, complete genome 3409________...c.........339757
HM107833.1 Human poliovirus 2 isolate CHN1078, complete genome 6619_...........cc.a..c..663876
HM107833.1 Human poliovirus 2 isolate CHN1078, complete genome 6493____.t....ct.........647766
HM107833.1 Human poliovirus 2 isolate CHN1078, complete genome 3409________...c.........339757
HM107834.1 Human poliovirus 2 isolate CHN3219, complete genome 6619_...........cc.a..c..663876
HM107834.1 Human poliovirus 2 isolate CHN3219, complete genome 6493____.t....ct.........647766
HM107834.1 Human poliovirus 2 isolate CHN3219, complete genome 3409________...c.........339757
AJ544513.1 Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050 3412_____..a...c.........339766
D90457.1CXA24CG Human coxsackievirus A24 DNA, complete genome 5678...atc...........____566266
AF405669.1 Human poliovirus 1 isolate HAI00003, complete genome 2862______..........a.a..287661
AF405682.1 Human poliovirus 1 isolate DOR00041C1, complete genome 2861______..........a.a..287561
AF405690.1 Human poliovirus 1 isolate DOR00013, complete genome 2861______..........a.a..287561
AF458333.1 Human poliovirus 1 isolate HAI01015, complete genome 2861______..........a.a..287561
AY278551.1 Human poliovirus 2 isolate P2S/Mog66-4 (21043), complete genome 3409________...c.........339757
AF448782.1 Human poliovirus 2 strain EGY88-074, complete genome 3409________...c.........339757
AM040035.1 Human poliovirus 2 complete virion genome, isolate PV2/4568-1/ISR98 3313________...c.........330157
AM040037.1 Human poliovirus 2 complete virion genome, isolate PV2/5074-18/ISR99 3313________...c.........330157
AM040039.1 Human poliovirus 2 complete virion genome, isolate PV2/5116-9/ISR99 3313________...c.........330157
AM084223.1 Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,3409________...c.........339757
AM084224.1 Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,3409________...c.........339757
DQ890385.1 Human poliovirus 2 strain NIE0210766, complete genome 3409________...c.........339757
DQ890386.1 Human poliovirus 2 strain NIE0110767, complete genome 3411________...c.........339957
AM884184.1 Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD0053409________...c.........339757
AM884185.1 Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD0063409________...c.........339757
AF499636.1 Human coxsackievirus A11 strain Belgium-1, complete genome 5662______...........____565252
AF499643.1 Human coxsackievirus A22 strain Chulman, complete genome 1446____.g.g..a........._143161
AF499641.1 Human coxsackievirus A19 strain 8663, complete genome 2828______..........a.c._284157
AB205396.1 Human coxsackievirus A18 genomic RNA, complete genome, strain: CAM1972884______..........a.a._289757
AF111966.2 Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome 4550________..........___454147
AY876912.1 Human enterovirus Ningbo3-02, complete genome 2873______.........._____288247
AY876913.1 Human enterovirus Hangzhou13-02, complete genome 2873______.........._____288247
DQ443001.1 Human coxsackievirus A24 isolate DSO-52/2005, complete genome 2878______.........._____288747
DQ443002.1 Human coxsackievirus A24 isolate DSO-26/2005, complete genome 2878______.........._____288747